Yes, if they are shared, then you wont see them under the Mailboxes menu, but you will under Recipients/Shared
To Convert:
Get-Mailbox <SampleUserYoucantSeeinEAC> | set-mailbox -Type Regular
To convert all of them in bulk
Get-Mailbox -RecipientTypeDetails Shared | Set-Mailbox -Type Regular
After that you will be able to see them in EAC under Mailboxes