microsoftml.rx_logistic_regression: Logistic Regression
microsoftml.rx_logistic_regression(formula: str, data: [revoscalepy.datasource.RxDataSource.RxDataSource, pandas.core.frame.DataFrame], method: ['binary', 'multiClass'] = 'binary', l2_weight: float = 1, l1_weight: float = 1, opt_tol: float = 1e-07, memory_size: int = 20, init_wts_diameter: float = 0, max_iterations: int = 2147483647, show_training_stats: bool = False, sgd_init_tol: float = 0, train_threads: int = None, dense_optimizer: bool = False, normalize: ['No', 'Warn', 'Auto', 'Yes'] = 'Auto', ml_transforms: list = None, ml_transform_vars: list = None, row_selection: str = None, transforms: dict = None, transform_objects: dict = None, transform_function: str = None, transform_variables: list = None, transform_packages: list = None, transform_environment: dict = None, blocks_per_read: int = None, report_progress: int = None, verbose: int = 1, ensemble: microsoftml.modules.ensemble.EnsembleControl = None, compute_context: revoscalepy.computecontext.RxComputeContext.RxComputeContext = None)
Machine Learning Logistic Regression
Logistic Regression is a classification method used to predict the value of a categorical dependent variable from its relationship to one or more independent variables assumed to have a logistic distribution. If the dependent variable has only two possible values (success/failure), then the logistic regression is binary. If the dependent variable has more than two possible values (blood type given diagnostic test results), then the logistic regression is multinomial.
The optimization technique used for
rx_logistic_regression is the
limited memory Broyden-Fletcher-Goldfarb-Shanno (L-BFGS). Both the L-BFGS
and regular BFGS algorithms use quasi-Newtonian methods to estimate the
computationally intensive Hessian matrix in the equation used by Newton’s
method to calculate steps. But the L-BFGS approximation uses only a limited
amount of memory to compute the next step direction, so that it is especially
suited for problems with a large number of variables. The
parameter specifies the number of past positions and gradients to store for
use in the computation of the next step.
This learner can use elastic net regularization: a linear combination of L1 (lasso) and L2 (ridge) regularizations. Regularization is a method that can render an ill-posed problem more tractable by imposing constraints that provide information to supplement the data and that prevents overfitting by penalizing models with extreme coefficient values. This can improve the generalization of the model learned by selecting the optimal complexity in the bias-variance tradeoff. Regularization works by adding the penalty that is associated with coefficient values to the error of the hypothesis. An accurate model with extreme coefficient values would be penalized more, but a less accurate model with more conservative values would be penalized less. L1 and L2 regularization have different effects and uses that are complementary in certain respects.
l1_weight: can be applied to sparse models, when working with high-dimensional data. It pulls small weights associated features that are relatively unimportant towards 0.
l2_weight: is preferable for data that is not sparse. It pulls large weights towards zero.
Adding the ridge penalty to the regularization overcomes some of lasso’s
limitations. It can improve its predictive accuracy, for example, when
the number of predictors is greater than the sample size.
x = l1_weight and
y = l2_weight,
ax + by = c
defines the linear span of the regularization terms. The default values
of x and y are both
1. An aggressive regularization can harm predictive
capacity by excluding important variables out of the model. So choosing the
optimal values for the regularization parameters is important for the
performance of the logistic regression model.
The formula as described in revoscalepy.rx_formula
Interaction terms and
F() are not currently supported in
A data source object or a character string specifying a .xdf file or a data frame object.
A character string that specifies the type of Logistic Regression:
"binary" for the default binary classification logistic regression or
"multiClass" for multinomial logistic regression.
The L2 regularization weight. Its value must be greater than
or equal to
0 and the default value is set to
The L1 regularization weight. Its value must be greater than
or equal to
0 and the default value is set to
Threshold value for optimizer convergence. If the improvement
between iterations is less than the threshold, the algorithm stops and
returns the current model. Smaller values are slower, but more accurate.
The default value is
Memory size for L-BFGS, specifying the number of past
positions and gradients to store for the computation of the next step. This
optimization parameter limits the amount of memory that is used to compute
the magnitude and direction of the next step. When you specify less memory,
training is faster but less accurate. Must be greater than or equal to
1 and the default value is
Sets the maximum number of iterations. After this number of steps, the algorithm stops even if it has not satisfied convergence criteria.
True to show the statistics of
training data and the trained model; otherwise,
default value is
False. For additional information about model
Set to a number greater than 0 to use Stochastic
Gradient Descent (SGD) to find the initial parameters. A non-zero value
set specifies the tolerance SGD uses to determine convergence.
The default value is
0 specifying that SGD is not used.
Sets the initial weights diameter that specifies
the range from which values are drawn for the initial weights. These
weights are initialized randomly from within this range. For
example, if the diameter is specified to be
d, then the weights
are uniformly distributed between
default value is
0, which specifies that all the weights are
The number of threads to use in training the model.
This should be set to the number of cores on the machine. Note that
L-BFGS multi-threading attempts to load dataset into memory. In case of
out-of-memory issues, set
1 to turn off
multi-threading. If None the number of threads to use is
determined internally. The default value is None.
True, forces densification of the internal
optimization vectors. If
False, enables the logistic regression
optimizer use sparse or dense internal states as it finds appropriate.
True requires the internal
optimizer to use a dense internal state, which may help alleviate load
on the garbage collector for some varieties of larger problems.
Specifies the type of automatic normalization used:
"Auto": if normalization is needed, it is performed automatically. This is the default choice.
"No": no normalization is performed.
"Yes": normalization is performed.
"Warn": if normalization is needed, a warning message is displayed, but normalization is not performed.
Normalization rescales disparate data ranges to a standard scale. Feature
scaling insures the distances between data points are proportional and
enables various optimization methods such as gradient descent to converge
much faster. If normalization is performed, a
MaxMin normalizer is
used. It normalizes values in an interval [a, b] where
-1 <= a <= 0
0 <= b <= 1 and
b - a = 1. This normalizer preserves
sparsity by mapping zero to zero.
Specifies a list of MicrosoftML transforms to be
performed on the data before training or None if no transforms are
to be performed. See
categorical_hash, for transformations that are supported.
These transformations are performed after any specified Python transformations.
The default value is None.
Specifies a character vector of variable names
to be used in
ml_transforms or None if none are to be used.
The default value is None.
NOT SUPPORTED. Specifies the rows (observations) from the data set that are to be used by the model with the name of a logical variable from the data set (in quotes) or with a logical expression using variables in the data set. For example:
row_selection = "old"will only use observations in which the value of the variable
row_selection = (age > 20) & (age < 65) & (log(income) > 10)only uses observations in which the value of the
agevariable is between 20 and 65 and the value of the
incomevariable is greater than 10.
The row selection is performed after processing any data
transformations (see the arguments
transform_function). As with all expressions,
row_selection can be
defined outside of the function call using the
NOT SUPPORTED. An expression of the form that represents
the first round of variable transformations. As with
row_selection) can be defined
outside of the function call using the
NOT SUPPORTED. A named list that contains objects that can be
The variable transformation function.
A character vector of input data set variables needed for the transformation function.
NOT SUPPORTED. A character vector specifying additional Python packages
(outside of those specified in
be made available and preloaded for use in variable transformation functions.
For example, those explicitly defined in revoscalepy functions via
transform_function arguments or those defined
implicitly via their
row_selection arguments. The
transform_packages argument may also be None, indicating that
no packages outside
RxOptions.get_option("transform_packages") are preloaded.
NOT SUPPORTED. A user-defined environment to serve as a parent to all
environments developed internally and used for variable data transformation.
transform_environment = None, a new “hash” environment with parent
revoscalepy.baseenv is used instead.
Specifies the number of blocks to read for each chunk of data read from the data source.
An integer value that specifies the level of reporting on the row processing progress:
0: no progress is reported.
1: the number of processed rows is printed and updated.
2: rows processed and timings are reported.
3: rows processed and all timings are reported.
An integer value that specifies the amount of output wanted.
0, no verbose output is printed during calculations. Integer
4 provide increasing amounts of information.
Sets the context in which computations are executed, specified with a valid revoscalepy.RxComputeContext. Currently local and revoscalepy.RxInSqlServer compute contexts are supported.
Control parameters for ensembling.
with the trained model.
This algorithm will attempt to load the entire dataset into memory
train_threads > 1 (multi-threading).
''' Binary Classification. ''' import numpy import pandas from microsoftml import rx_logistic_regression, rx_predict from revoscalepy.etl.RxDataStep import rx_data_step from microsoftml.datasets.datasets import get_dataset infert = get_dataset("infert") import sklearn if sklearn.__version__ < "0.18": from sklearn.cross_validation import train_test_split else: from sklearn.model_selection import train_test_split infertdf = infert.as_df() infertdf["isCase"] = infertdf.case == 1 data_train, data_test, y_train, y_test = train_test_split(infertdf, infertdf.isCase) model = rx_logistic_regression( formula=" isCase ~ age + parity + education + spontaneous + induced ", data=data_train) print(model.coef_) # RuntimeError: The type (RxTextData) for file is not supported. score_ds = rx_predict(model, data=data_test, extra_vars_to_write=["isCase", "Score"]) # Print the first five rows print(rx_data_step(score_ds, number_rows_read=5))
Automatically adding a MinMax normalization transform, use 'norm=Warn' or 'norm=No' to turn this behavior off. Beginning processing data. Rows Read: 186, Read Time: 0, Transform Time: 0 Beginning processing data. Beginning processing data. Rows Read: 186, Read Time: 0.001, Transform Time: 0 Beginning processing data. Beginning processing data. Rows Read: 186, Read Time: 0, Transform Time: 0 Beginning processing data. LBFGS multi-threading will attempt to load dataset into memory. In case of out-of-memory issues, turn off multi-threading by setting trainThreads to 1. Beginning optimization num vars: 6 improvement criterion: Mean Improvement L1 regularization selected 5 of 6 weights. Not training a calibrator because it is not needed. Elapsed time: 00:00:00.0646405 Elapsed time: 00:00:00.0083991 OrderedDict([('(Bias)', -1.2366217374801636), ('spontaneous', 1.9391206502914429), ('induced', 0.7497404217720032), ('parity', -0.31517016887664795), ('age', -3.162723260174971e-06)]) Beginning processing data. Rows Read: 62, Read Time: 0, Transform Time: 0 Beginning processing data. Elapsed time: 00:00:00.0287290 Finished writing 62 rows. Writing completed. Rows Read: 5, Total Rows Processed: 5, Total Chunk Time: 0.001 seconds isCase PredictedLabel Score Probability 0 False False -1.341681 0.207234 1 True True 0.597440 0.645070 2 False True 0.544912 0.632954 3 False False -1.289152 0.215996 4 False False -1.019339 0.265156
''' MultiClass Classification ''' import numpy import pandas from microsoftml import rx_logistic_regression, rx_predict from revoscalepy.etl.RxDataStep import rx_data_step from microsoftml.datasets.datasets import get_dataset iris = get_dataset("iris") import sklearn if sklearn.__version__ < "0.18": from sklearn.cross_validation import train_test_split else: from sklearn.model_selection import train_test_split irisdf = iris.as_df() irisdf["Species"] = irisdf["Species"].astype("category") data_train, data_test, y_train, y_test = train_test_split(irisdf, irisdf.Species) model = rx_logistic_regression( formula=" Species ~ Sepal_Length + Sepal_Width + Petal_Length + Petal_Width ", method="multiClass", data=data_train) print(model.coef_) # RuntimeError: The type (RxTextData) for file is not supported. score_ds = rx_predict(model, data=data_test, extra_vars_to_write=["Species", "Score"]) # Print the first five rows print(rx_data_step(score_ds, number_rows_read=5))
Automatically adding a MinMax normalization transform, use 'norm=Warn' or 'norm=No' to turn this behavior off. Beginning processing data. Rows Read: 112, Read Time: 0, Transform Time: 0 Beginning processing data. Beginning processing data. Rows Read: 112, Read Time: 0, Transform Time: 0 Beginning processing data. Beginning processing data. Rows Read: 112, Read Time: 0, Transform Time: 0 Beginning processing data. LBFGS multi-threading will attempt to load dataset into memory. In case of out-of-memory issues, turn off multi-threading by setting trainThreads to 1. Beginning optimization num vars: 15 improvement criterion: Mean Improvement L1 regularization selected 9 of 15 weights. Not training a calibrator because it is not needed. Elapsed time: 00:00:00.0493224 Elapsed time: 00:00:00.0080558 OrderedDict([('setosa+(Bias)', 2.074636697769165), ('versicolor+(Bias)', 0.4899507164955139), ('virginica+(Bias)', -2.564580202102661), ('setosa+Petal_Width', -2.8389241695404053), ('setosa+Petal_Length', -2.4824044704437256), ('setosa+Sepal_Width', 0.274869441986084), ('versicolor+Sepal_Width', -0.2645561397075653), ('virginica+Petal_Width', 2.6924400329589844), ('virginica+Petal_Length', 1.5976412296295166)]) Beginning processing data. Rows Read: 38, Read Time: 0, Transform Time: 0 Beginning processing data. Elapsed time: 00:00:00.0331861 Finished writing 38 rows. Writing completed. Rows Read: 5, Total Rows Processed: 5, Total Chunk Time: 0.001 seconds Species Score.0 Score.1 Score.2 0 virginica 0.044230 0.364927 0.590843 1 setosa 0.767412 0.210586 0.022002 2 setosa 0.756523 0.221933 0.021543 3 setosa 0.767652 0.211191 0.021157 4 versicolor 0.116369 0.498615 0.385016