After you sequence an application but before you save it, you can manually modify a sequenced application package to specify how it will retain its settings. Use the Sequencer attributes section to specify whether a file in a sequenced application package will be available to a specific user or to all users in the community.
To modify Sequencer attributes
Click the Files tab.
Select User Data or Application Data, depending on how you want an application to retain its settings, and select Override to enable the client to overwrite the cached application.