Sorry for the delay in getting back.
So far I have had no success in fixing this problem. I believe it is to far gone and I may need to rebuild it. It looks as though the issue arose from a failed update; server restarted during update process while the updates were being applied. That is only part of the update process ran. Not a clever thing to do.
I am in several minds as to ..
- Attempt to restore the server from a backup and allow it to resync with the other DC or
- Rebuild the server as @Dave Patrick suggested
- System Recovery from the console.
Cheers